ALTERNATING CURRENT ELECTROKINETICS BASED CAPACITIVE AFFINITY BIOSENSOR: A POINT-OF-CARE DIAGNOSTIC PLATFORM

Capacitive bioaffinity detection using microelectrodes is considered as a promising label-free method for point-of-care diagnosis, though with challenges in sensitivity, specificity and the time “from sample to result.” This work presents an alternating current (AC)-electrokinetic based capacitive affinity sensing method that is capable of realizing rapid in-situ detection of specific biomolecular interactions such as probe-analyte binding. The capacitive biosensor presented here employs elevated AC potentials at a fixed frequency for impedimetric interrogation of the microelectrodes. Such an AC signal is capable of inducing dielectrophoresis (DEP) and AC electrothermal (ACET) effects, so as to realize in-situ enrichment of macro and even small molecules at microelectrodes and hence accelerated detection. Experimental study of the DEP/ACET-enhanced capacitive sensing method was conducted, and the results corroborate our hypothesis. This capacitive sensing method has been shown to work with various types and sizes of biomolecules (such as antibodies, virus and small molecules) to differentiate disease-positive samples from negative samples within or less than two minutes, while conventional assay would require multiple processing steps and take hours to complete. The results showed high accuracy and sensitivity. Overall, this capacitive affinity biosensor may form a basis for the development of a feasible point-of-care diagnostic platform for the detection of infectious diseases in the future

Generation of two induced pluripotent stem cell lines with heterozygous and homozygous GAG deletion in TOR1A gene from a healthy hiPSC line

A typical DYT1 dystonia is caused by a heterozygous GAG deletion (c.907-909) in the TOR1A gene (ΔE, p.Glu303del) and the pathogenesis is not clear. In this study, human induced pluripotent stem cell (hiPSC) lines carrying the heterozygous or homozygous GAG deletion in TOR1A gene were generated by genetic modification of a healthy hiPSC line (WTC11, UCSFi001-A). These hiPSC lines showed the normal stem cell morphology and karyotype, expressed the same pluripotency markers as their parental line, and had the capacity to differentiate into three germ layers, providing a valuable resource in determining the pathogenesis of human DYT1 dystonia

Combinatorial Histone Readout by the Dual Plant Homeodomain (PHD) Fingers of Rco1 Mediates Rpd3S Chromatin Recruitment and the Maintenance of Transcriptional Fidelity

The plant homeodomain (PHD) finger is found in many chromatin-associated proteins and functions to recruit effector proteins to chromatin through its ability to bind both methylated and unmethylated histone residues. Here, we show that the dual PHD fingers of Rco1, a member of the Rpd3S histone deacetylase complex recruited to transcribing genes, operate in a combinatorial manner in targeting the Rpd3S complex to histone H3 in chromatin. Although mutations in either the first or second PHD finger allow for Rpd3S complex formation, the assembled complexes from these mutants cannot recognize nucleosomes or function to maintain chromatin structure and prevent cryptic transcriptional initiation from within transcribed regions. Taken together, our findings establish a critical role of combinatorial readout in maintaining chromatin organization and in enforcing the transcriptional fidelity of genes

Reciprocal facilitation between annual plants and burrowing crabs:Implications for the restoration of degraded saltmarshes

Increasing evidence shows that facilitative interactions between species play an essential role in coastal wetland ecosystems. However, there is a lack of understanding of how such interactions can be used for restoration purposes in saltmarsh ecosystems. We therefore studied the mechanisms of reciprocal facilitative interactions between native annual plants, Suaeda salsa, and burrowing crabs, Helice tientsinensis, in a middle-elevation saltmarsh (with generally high plant density and moderate tides) in the Yellow River Delta of China. We investigated the relationship between the densities of the plants and crab burrows in different seasons. Then, we tested whether and how saltmarsh plants and crabs indeed facilitate each other in a series of field and laboratory experiments. Finally, we applied the results by creating a field-scale artificial approach for microtopographic modification to restore a degraded saltmarsh. We found that the density of plant seedlings in spring was positively correlated with the density of crab burrows in the previous autumn; moreover, the density of crab burrows was correlated with the density of plants in summer. The concave-convex surface microtopography created by crabs promoted seed retention and seedling establishment of saltmarsh plants in winter and spring. These plants in turn facilitated crabs by inhibiting predators, providing food and reducing physical stresses for crabs in summer and autumn. The experimental removal of saltmarsh plants decreased crab burrow density, while both transplanting and simulating plants in bare patches promoted crabs. The microtopographic modification, inspired by our new understanding of the interactions between saltmarsh plants and crabs, showed that these degraded saltmarsh ecosystems can be restored by a single ploughing intervention. Synthesis. Our results suggest a reciprocal facilitation between annual plants and burrowing crabs in a middle-elevation saltmarsh ecosystem. This knowledge yielded new restoration options for degraded coastal saltmarshes through the one-time ploughing initiation of microtopographic variation, which could promote the re-establishment of ecosystem engineers and lead to the efficient recovery of pioneer coastal vegetation and associated fauna

How do urban residents use energy for winter heating at home? A large-scale survey in the hot summer and cold winter climate zone in the Yangtze River region

The increasing demand for improving indoor thermal environment in the hot summer and cold winter climate zone (HSCW) in the Yangtze River region in China poses enormous challenges in terms of energy policy and design solutions for this unique region. A comprehensive understanding of people’s habits and behaviors involving winter heating is imperative for decision making for urban heating infrastructure investment strategies that significantly impact the decarbonization of heating. However, there are little studies of a large-scale survey to gain such knowledge acrose the region. The aim of this study is to develop a rigorous survey method in order to obtain reliable data for analysis. Five municipal/capital cities across the upper, middle and downstream Yangtze River were surveyed based on 30 randomly generated locations in each city. A total of 8481 valuable samples were obtained in the survey conducted in the winter from November 2017 to March 2018. It is revealed that air conditioning/air source heat pumps are the predominant systems, accounting for 63% and 58% for bedroom and living room heating respectively. The use patterns of heating are diverse featuring ‘part-time-part-space’ systems in accordance with the occupancy patterns. There is significant evidence of the habit of opening a window to provide a gap for fresh air irrespective of whether the heating is in use. Two-step cluster analysis is employed to subdivide occupants’ heating-related behaviors into three clusters to characterize households. This study fills the knowledge gap of winter-heating-related behaviors. The research outcomes will benefit building energy simulations for energy prediction and help policy makers making decisions on providing strategic guidance in terms of winter heating solutions in this region

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Research Progress of All-Solid-State Lithium-Ion Batteries

In order to reach the peak in carbon dioxide emissions by 2030 and achieve carbon neutrality by 2060, it is necessary to perform technical research to reduce carbon emissions. Key core technologies such as zero emissions/reductions, hydrogen industry, and energy storage are particularly important in energy conservation and emissions reduction. In terms of energy storage, lithium-ion batteries (LIBs) are more advanced. However, traditional LIBs have risks such as swelling, leakage, and flammability. The creation of solid-state lithium-ion batteries (SSLBs) will be thoroughly described in this article, along with the benefits and drawbacks of various electrolytes and electrode materials. Additionally, the future development prospects of SSLBs will be discussed. In the long run, with the continuous optimization of SSLBs performance, the positive electrode material system is a higher specific capacity of lithium-rich materials, and the lithium-ion batteries with negative metal lithium will become mainstream, and the SSLBs technology with a higher energy density, lower cost, more security, and better stability will play a vital supporting role in the clean energy transformation

A Hybrid Electromagnetic and Tendon-Driven Actuator for Minimally Invasive Surgery

Minimally invasive surgery (MIS) is a surgical technique that facilitates access to the internal tissues and organs of a patient’s body via a limited number of small incisions or natural orifice of the patients. Such a technique requires specialized slender surgical instruments with a high levels of dexterity and functionality. However, the currently available MIS instruments are rigid and could offer only limited degrees of freedom (DOFs) that hampers the surgeon’s effort to perform the required operation accurately. In this study, we have developed a hybrid electromagnetic and tendon-driven actuator as an integral part of MIS surgical instruments to provide them with optimum angulation. The design uses a novel electromagnetic structure to lock the position of individual joints, and a tendon-driven structure for the articulation of the surgical instrument. The finite element method (FEM) was utilized to predict the performance of the actuator, which was experimentally validated. Subsequently, a prototype was assembled, and corresponding kinematics analysis was presented to visualize the improvement of the developed mechanism on the functional workspace of the MIS instruments. It was concluded that the developed mechanism could offer three additional DOFs for the surgical instrument and angulation of 180° for each articulated joint

Generation of two induced pluripotent stem cell lines with heterozygous and homozygous amyotrophic lateral sclerosis-causing mutation P525L (c.1574C > T) in FUS gene

Mutations in the FUS (fused in sarcoma) gene are implicated in the neurodegenerative disease amyotrophic lateral sclerosis (ALS). However, the pathophysiology underlying these mutations remains elusive. In this study, we created two induced pluripotent stem cell (iPSC) lines through genetic modification of a healthy hiPSC line (WTC11, UCSFi001-A). These iPSC lines carry the heterozygous and homozygous P525L (c.1574C > T) mutation in the FUS gene. We confirmed that both cell lines possess typical stem cell morphology, normal karyotype, and pluripotency. Our iPSC lines offer a valuable resource for investigating the pathological mechanisms underlying the FUS mutation P525L in ALS

Nucleosome Contact Triggers Conformational Changes of Rpd3S Driving High-Affinity H3K36me Nucleosome Engagement

The Rpd3S histone deacetylase complex utilizes two subunits, Eaf3 and Rco1, to recognize nucleosomes methylated at H3K36 (H3K36me) with high affinity and strong specificity. However, the chromobarrel domain of Eaf3 (CHD) that is responsible for H3K36me recognition only binds weakly and with little specificity to histone peptides. Here, using deuterium exchange mass spectrometry (DXMS), we detected conformational changes of Rpd3S upon its contact with chromatin. Interestingly, we found that the Sin3-interacting domain of Rco1 (SID) allosterically stimulates preferential binding of Eaf3 to H3K36-methylated peptides. This activation is tightly regulated by an autoinhibitory mechanism to ensure optimal multivalent engagement of Rpd3S with nucleosomes. Lastly, we identified mutations at the interface between SID and Eaf3 that do not disrupt complex integrity but severely compromise Rpd3S functions in vitro and in vivo, suggesting that the nucleosome-induced conformational changes are essential for chromatin recognition